Borussia Dortmund and Schalke 04 have issued a joint statement condemning the violence which marred Sunday's (AEDT) Revier derby between the two sides.
The two clubs accused several hundred supporters of both sides of "abusing" the match and "deliberately endangering the safety of the largely peaceful majority of fans and the security services" which their actions.
The clubs are in talks with the police about the events, the said in a statement which appeared on the official websites of both.
Approximately 200 people were arrested as a result of the violence which occurred ahead of the match, won 2-1 by Schalke.
Police and bystanders were among those injured when paving stones, bottles and rubbish bins were used as missiles, while the authorities responded with pepper spray and a water cannon.
Dortmund chief executive
Those supporters involved now face stadium bans.
Watzke added: "After analysing the images and in consultation with the police and Schalke we will carry out an individual case review and clamp down.
"We will punish proven serious violations with stadium bans. We are very concerned and apologise to the victims of violent offenders."
Borussia Dortmund defender Mats Hummels insists the UEFA Champions League final will not be his last game for the club.